http://tech.groups.yahoo.com/group/cnsbb/ CNS software package bulletin board Wed, 17 Jun 2009 18:33:14 GMT Lukacs, Christine http://tech.groups.yahoo.com/group/cnsbb/message/1827 http://tech.groups.yahoo.com/group/cnsbb/message/1827 Hi- I have a bromine in my ligand, and it always refines with a much higher b-factor than the rest of the ligand, and correspondingly, a bunch of negative Tue, 16 Jun 2009 08:50:32 GMT Shabeir http://tech.groups.yahoo.com/group/cnsbb/message/1826 http://tech.groups.yahoo.com/group/cnsbb/message/1826 Dear cnsbb,     I meet two problems in Distance restraints  and Dihedral angle restraints when running CNS.   %NOESET-ERR: error in selection - no atoms Mon, 15 Jun 2009 15:17:53 GMT Julie Fisher http://tech.groups.yahoo.com/group/cnsbb/message/1825 http://tech.groups.yahoo.com/group/cnsbb/message/1825 Dear All, Have any of you used cns-solve with a spacer-9 system connecting two DNA strands? The spacer-9 system is supplied as a phosphoramidite as shown; Thu, 11 Jun 2009 05:53:14 GMT jonathanwesleystone http://tech.groups.yahoo.com/group/cnsbb/message/1824 http://tech.groups.yahoo.com/group/cnsbb/message/1824 Hello, I am trying to install some CNS Solve 1.2 for a fellow researcher and have run into a compile problem. `uname -a` is: Linux uridine 2.6.9-5.ELsmp #1 SMP Thu, 04 Jun 2009 21:11:05 GMT Christian Biertuempfel http://tech.groups.yahoo.com/group/cnsbb/message/1823 http://tech.groups.yahoo.com/group/cnsbb/message/1823 Hi Roberto, Check if you forgot a " in your input file. Cheers, christian ... _______________________________________________________________________ Dr. Thu, 04 Jun 2009 20:40:47 GMT Roberto Kopke Salinas http://tech.groups.yahoo.com/group/cnsbb/message/1822 http://tech.groups.yahoo.com/group/cnsbb/message/1822 Dear All, I have been doing calculations with Haddock that uses CNS. But I get the series of error messages below when the program reads generate.inp. The Thu, 04 Jun 2009 05:13:41 GMT Iain Kerr http://tech.groups.yahoo.com/group/cnsbb/message/1821 http://tech.groups.yahoo.com/group/cnsbb/message/1821 Yeah, misplaced '='... Clearly wasn't awake enough then as you'd already replied anyway ! Tue, 02 Jun 2009 15:41:03 GMT Iain Kerr http://tech.groups.yahoo.com/group/cnsbb/message/1820 http://tech.groups.yahoo.com/group/cnsbb/message/1820 Stella, Under the bash shell you use 'export' and not 'setenv' (C shell command) to set environmental variables: export=CNS_SOLVE Tue, 02 Jun 2009 12:06:50 GMT Justin Lecher http://tech.groups.yahoo.com/group/cnsbb/message/1819 http://tech.groups.yahoo.com/group/cnsbb/message/1819 ... setenv is specific for csh or tcsh. You have to use export at bash: export CNS_SOLVE='/softwares/cns/cns_solve_1.21' justin -- Justin Lecher Institute for Tue, 02 Jun 2009 10:45:24 GMT Stella Joe http://tech.groups.yahoo.com/group/cnsbb/message/1818 http://tech.groups.yahoo.com/group/cnsbb/message/1818 Dear cnsbb, after editing the cns_solve_env file as follows: setenv CNS_SOLVE '/softwares/cns/cns_solve_1.21' setenv CNS_SOLVE $CNS_SOLVE didnot run the Mon, 01 Jun 2009 14:45:51 GMT Axel Brunger http://tech.groups.yahoo.com/group/cnsbb/message/1817 http://tech.groups.yahoo.com/group/cnsbb/message/1817 Don't run the install script for the precompiled version as as explicitly stated in the download instructions and in the Installation instructions on the CNS Mon, 01 Jun 2009 14:24:00 GMT stella.joe13 http://tech.groups.yahoo.com/group/cnsbb/message/1816 http://tech.groups.yahoo.com/group/cnsbb/message/1816 Dear cnsbb, How to use pre-compiled linux(32-bit; with bash shell) binaries to get the compilers to work in CNS ver 1.21. Please see below the complete process Thu, 28 May 2009 14:31:44 GMT Axel Brunger http://tech.groups.yahoo.com/group/cnsbb/message/1815 http://tech.groups.yahoo.com/group/cnsbb/message/1815 Use the pre-compiled linux binaries that are available from the CNS download site. Axel Brunger ... Axel T. Brunger Investigator, Howard Hughes Medical Thu, 28 May 2009 09:58:23 GMT Ratna Veni http://tech.groups.yahoo.com/group/cnsbb/message/1813 http://tech.groups.yahoo.com/group/cnsbb/message/1813 Dear CNS BB, We are trying to install CNS on linux-based ubuntu8.10 platform. while trying to install CNS, we are asked to install compiler. When we tried to Tue, 26 May 2009 15:57:11 GMT salmonrushdee http://tech.groups.yahoo.com/group/cnsbb/message/1812 http://tech.groups.yahoo.com/group/cnsbb/message/1812 in the tutorial, the section "enantiomorph ambiguity" groups the 22 enantiomorphic space groups into 11 pairs, each pair related by a center of inversion. in